[api-dev] failed agave job
Duvick, Jonathan P [GDCBS]
jduvick at iastate.edu
Tue Feb 9 14:58:03 MST 2016
This 'false' FAILED status tends to happen to my jobs after SUBMITTING and before QUEUED status.
Identical submissions may or may not 'falsely' FAIL.
Jon Duvick
PlantGDB Manager
http://www.plantgdb.org/
Department of Genetics, Development and Cell Biology
2258 Molecular Biology Building
Iowa State University
Ames IA 50011
(515) 294-2360
(515) 294-6755 FAX
________________________________
From: api-dev <api-dev-bounces at maillist.cyverse.org> on behalf of Barthelson, Roger A - (rogerab) <rogerab at email.arizona.edu>
Sent: Tuesday, February 09, 2016 1:01 PM
To: Duvick, Jonathan P [GDCBS]
Cc: Discussion of CyVerse API development
Subject: [api-dev] failed agave job
This is what I see if I run jobs-history -v, which does include time references, but I guess they are for TACC time, which seems to be different from CyVerse time.
Roger
[rogerab at hratius ~]$ jobs-history -v 5870516747098526181-ee4acae9fffff7a7-0001-007
[
{
"created": "2016-02-08T19:13:30.000-06:00",
"description": "Job accepted and queued for submission.",
"status": "PENDING"
},
{
"created": "2016-02-08T19:44:46.000-06:00",
"description": "Input staging for job is current paused due to quota restrictions. System stampede.tacc.utexas.edu is currently at maximum capacity for concurrent active jobs.. This job will resume staging once one or more current jobs complete.",
"status": "PENDING"
},
{
"created": "2016-02-08T21:30:02.000-06:00",
"description": "Attempt 1 to stage job inputs",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T21:30:02.000-06:00",
"description": "Identifying input files for staging",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T21:30:06.000-06:00",
"description": "Copy in progress",
"progress": {
"averageRate": 9118092.0,
"source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",
"totalActiveTransfers": 0,
"totalBytes": 17087305558,
"totalBytesTransferred": 17087305558,
"totalFiles": 1,
"uuid": "7614193479804850661-ee4acae9fffff7a7-0001-009"
},
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T22:39:53.000-06:00",
"description": "Attempt 1 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr2_EntGenome_S1_L001_R2_001.fastq",
"status": "PENDING"
},
{
"created": "2016-02-08T22:39:54.000-06:00",
"description": "Attempt 2 to stage job inputs",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T22:39:54.000-06:00",
"description": "Identifying input files for staging",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T22:39:56.000-06:00",
"description": "Copy in progress",
"progress": {
"averageRate": 8733429.0,
"source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",
"totalActiveTransfers": 1,
"totalBytes": 17087305558,
"totalBytesTransferred": 14925430784,
"totalFiles": 1,
"uuid": "3094801429486309861-ee4acae9fffff7a7-0001-009"
},
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T23:08:27.000-06:00",
"description": "Attempt 2 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",
"status": "PENDING"
},
{
"created": "2016-02-08T23:08:28.000-06:00",
"description": "Attempt 3 to stage job inputs",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T23:08:28.000-06:00",
"description": "Identifying input files for staging",
"status": "PROCESSING_INPUTS"
},
{
"created": "2016-02-08T23:08:31.000-06:00",
"description": "Copy in progress",
"progress": {
"averageRate": 6721471.0,
"source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",
"totalActiveTransfers": 1,
"totalBytes": 17087305558,
"totalBytesTransferred": 2130706432,
"totalFiles": 1,
"uuid": "2971066926382125541-ee4acae9fffff7a7-0001-009"
},
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T23:13:51.000-06:00",
"description": "Attempt 3 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T23:13:52.000-06:00",
"description": "Cleaning up remote work directory.",
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T23:13:53.000-06:00",
"description": "Completed cleaning up remote work directory.",
"status": "STAGING_INPUTS"
},
{
"created": "2016-02-08T23:13:53.000-06:00",
"description": "Unable to stage inputs for job after 3 attempts. Job cancelled.",
"status": "FAILED"
}
]
--
Roger Barthelson Ph.D.
Scientific Analyst
CyVerse
rogerab at cyverse.org
TEL:+1-520-977-5249
http://www.cyverse.org<http://www.iplantcollaborative.org/>
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