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<p>This 'false' FAILED status tends to happen to my jobs after SUBMITTING and before QUEUED status.</p>
<p>Identical submissions may or may not 'falsely' FAIL.<br>
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<div class="PlainText">Jon Duvick<br>
PlantGDB Manager<br>
http://www.plantgdb.org/<br>
Department of Genetics, Development and Cell Biology<br>
2258 Molecular Biology Building<br>
Iowa State University<br>
Ames IA 50011<br>
<br>
(515) 294-2360<br>
(515) 294-6755 FAX</div>
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> api-dev <api-dev-bounces@maillist.cyverse.org> on behalf of Barthelson, Roger A - (rogerab) <rogerab@email.arizona.edu><br>
<b>Sent:</b> Tuesday, February 09, 2016 1:01 PM<br>
<b>To:</b> Duvick, Jonathan P [GDCBS]<br>
<b>Cc:</b> Discussion of CyVerse API development<br>
<b>Subject:</b> [api-dev] failed agave job</font>
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This is what I see if I run jobs-history -v, which does include time references, but I guess they are for TACC time, which seems to be different from CyVerse time.</div>
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Roger</div>
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<div id="bloop_customfont" style="margin:0px">[rogerab@hratius ~]$ jobs-history -v 5870516747098526181-ee4acae9fffff7a7-0001-007</div>
<div id="bloop_customfont" style="margin:0px">[</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T19:13:30.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Job accepted and queued for submission.",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PENDING"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T19:44:46.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Input staging for job is current paused due to quota restrictions. System stampede.tacc.utexas.edu is currently at maximum capacity for concurrent active jobs.. This job will resume staging
once one or more current jobs complete.",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PENDING"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T21:30:02.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 1 to stage job inputs",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T21:30:02.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Identifying input files for staging",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T21:30:06.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Copy in progress",</div>
<div id="bloop_customfont" style="margin:0px"> "progress": {</div>
<div id="bloop_customfont" style="margin:0px"> "averageRate": 9118092.0,</div>
<div id="bloop_customfont" style="margin:0px"> "source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "totalActiveTransfers": 0,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytes": 17087305558,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytesTransferred": 17087305558,</div>
<div id="bloop_customfont" style="margin:0px"> "totalFiles": 1,</div>
<div id="bloop_customfont" style="margin:0px"> "uuid": "7614193479804850661-ee4acae9fffff7a7-0001-009"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T22:39:53.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 1 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr2_EntGenome_S1_L001_R2_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PENDING"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T22:39:54.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 2 to stage job inputs",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T22:39:54.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Identifying input files for staging",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T22:39:56.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Copy in progress",</div>
<div id="bloop_customfont" style="margin:0px"> "progress": {</div>
<div id="bloop_customfont" style="margin:0px"> "averageRate": 8733429.0,</div>
<div id="bloop_customfont" style="margin:0px"> "source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "totalActiveTransfers": 1,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytes": 17087305558,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytesTransferred": 14925430784,</div>
<div id="bloop_customfont" style="margin:0px"> "totalFiles": 1,</div>
<div id="bloop_customfont" style="margin:0px"> "uuid": "3094801429486309861-ee4acae9fffff7a7-0001-009"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:08:27.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 2 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PENDING"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:08:28.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 3 to stage job inputs",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:08:28.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Identifying input files for staging",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "PROCESSING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:08:31.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Copy in progress",</div>
<div id="bloop_customfont" style="margin:0px"> "progress": {</div>
<div id="bloop_customfont" style="margin:0px"> "averageRate": 6721471.0,</div>
<div id="bloop_customfont" style="margin:0px"> "source": "agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "totalActiveTransfers": 1,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytes": 17087305558,</div>
<div id="bloop_customfont" style="margin:0px"> "totalBytesTransferred": 2130706432,</div>
<div id="bloop_customfont" style="margin:0px"> "totalFiles": 1,</div>
<div id="bloop_customfont" style="margin:0px"> "uuid": "2971066926382125541-ee4acae9fffff7a7-0001-009"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:13:51.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Attempt 3 failed to stage job inputs. Failed to transfer input agave://data.iplantcollaborative.org/matthewterry/Ent_Genome/HTProcess_trimmomatic_0.32_Ent_Genome-2015-06-25-15-48-02.5/HTProcess_Reads_T1/TrmPr1_EntGenome_S1_L001_R1_001.fastq",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:13:52.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Cleaning up remote work directory.",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:13:53.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Completed cleaning up remote work directory.",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "STAGING_INPUTS"</div>
<div id="bloop_customfont" style="margin:0px"> },</div>
<div id="bloop_customfont" style="margin:0px"> {</div>
<div id="bloop_customfont" style="margin:0px"> "created": "2016-02-08T23:13:53.000-06:00",</div>
<div id="bloop_customfont" style="margin:0px"> "description": "Unable to stage inputs for job after 3 attempts. Job cancelled.",</div>
<div id="bloop_customfont" style="margin:0px"> "status": "FAILED"</div>
<div id="bloop_customfont" style="margin:0px"> }</div>
<div id="bloop_customfont" style="margin:0px">]</div>
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<div id="bloop_sign_1455044369570408960" class="bloop_sign">
<div style="font-family:helvetica,arial; font-size:13px">-- <br>
<div style="font-family:'helvetica Neue',helvetica"><span style="color:rgb(54,61,76); font-family:Helvetica; font-size:15px; line-height:22px">Roger Barthelson Ph.D.</span></div>
<p style="font-family:'helvetica Neue',helvetica; margin:0in 0in 0.0001pt"><span style="font-family:verdana,sans-serif">Scientific Analyst</span></p>
<p style="font-family:'helvetica Neue',helvetica; margin:0in 0in 0.0001pt"><span style="font-family:verdana,sans-serif"><b>CyVerse</b></span></p>
<p style="font-family:'helvetica Neue',helvetica; margin:0in 0in 0.0001pt"><span style="font-family:verdana,sans-serif">rogerab@cyverse.org</span></p>
<p style="font-family:'helvetica Neue',helvetica; margin:0in 0in 0.0001pt">TEL:+1-520-977-5249</p>
<span style="font-family:verdana,sans-serif"><a href="http://www.iplantcollaborative.org/">http://www.cyverse.org</a></span><br style="font-family:Helvetica; font-size:15px; line-height:22px; color:rgb(54,61,76)">
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