[api-dev] Agave status

[Rion Dooley]

That's just irods keeping things interesting. There was about half an hour last night when it refused to do anything other than say it was there and hang up. Then it had a snicker bar and everything was fine again. I have a theory that irods is actually diabetic and that's why it's grumpy so often. hopefully 4.x installs a separate dedicated nutritionist.

--
Rion

----- Reply message -----
From: "Ghiban, Cornel" <ghiban at cshl.edu>
To: "Rion Dooley" <dooley at tacc.utexas.edu>
Cc: "api-dev at maillist.cyverse.org" <api-dev at maillist.cyverse.org>
Subject: [api-dev] Agave status
Date: Wed, Feb 17, 2016 12:05 PM

Also, when submitting jobs I, SOMETIMES, get this error:

400 Bad Request
{"status":"error","message":"Unable to locate application assets on
remote system. Remote server responded with: Failed to authenticate to
remote server.","version":"2.1.6-rbd07feb"}

If I try again it works...

Cornel


On Wed, 2016-02-17 at 11:36 -0500, Cornel Ghiban wrote:
> Hi Matt,
>
> I did both but after regenerating the API client secret/key (using REST
> calls) it seems to work.
>
> Thanks,
> Cornel
>
> On Wed, 2016-02-17 at 16:33 +0000, Matthew Vaughn wrote:
> > Have you regenerated a new client and token set? And if you did, did you use the browser interface or did you use the Agave CLI? If the former, that’s the issue. We should have made it clear that using the browser interface wouldn’t work. So… do this for me:
> >
> > Update your Agave CLI (cd foundation-cli && git pull) then clients-create -S followed by auth-tokens-create -S . Then, try listing again. I suspect it will work for you then.
> >
> > Using a non-privledged user, this is what I see after following those steps on a fresh VM
> >
> > apps-list -P -l 25
> >
> > SPAdes-hi-mem-3.6.0u1
> > geneseqer-large-stampede-5.0.0u2
> > geneseqer-medium-stampede-5.0.0u2
> > geneseqer-small-stampede-5.0.0u2
> > vContact_pcs-0.1.49u4
> > vContact-0.1.49u2
> > vContact-Gene2Contig-0.1.0u1
> > idba_ud_1000gb_24h-1.1.2u1
> > idba_ud_32gb_24h-1.1.2u1
> > idba_ud_32gb_4h-1.1.2u1
> > MetaGeneMark-2.26.0u1
> > FragGeneScan-1.20.0u1
> > SPAdes-3.6.0u1
> > savp-0.3.1u1
> > Interproscan-5.16.55u2
> > BWA-mem-0.7.12u2
> > CloudSTRUCTURE-2.3.4u2
> > Platypus-0.7.9.5u1
> > Freebayes-0.9.20u1
> > GATK_haplotypecaller-3.2.2u1
> > GATK_combinegvcfs-3.2.2u1
> > GATK_genotypegvcfs-3.2.2u1
> > Picard_preprocess-1.98u1
> > seqtk_seq-1.0.76u1
> > EMS_mutation-1.0.0u1
> >
> >
> >
> > > On Feb 17, 2016, at 10:16 AM, Ghiban, Cornel <ghiban at cshl.edu> wrote:
> > >
> > > Hi all,
> > >
> > > There seems to be an issue (or more) with Agave API. I'm not seeing any
> > > applications available. Could anyone tell us what's going on?
> > >
> > > Thanks,
> > > Cornel
> > >
> > > _______________________________________________
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> >
>


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