[api-dev] Agave status
Ghiban, Cornel
ghiban at cshl.edu
Wed Feb 17 09:58:34 MST 2016
Hi Matt,
I've noticed the token's life was decreased to only one hour. Could one
increase that is they wanted?
$ auth-tokens-refresh
Token for iplantc.org:XYX successfully refreshed and cached for 3600
seconds
Thanks,
Cornel
On Wed, 2016-02-17 at 16:33 +0000, Matthew Vaughn wrote:
> Have you regenerated a new client and token set? And if you did, did you use the browser interface or did you use the Agave CLI? If the former, that’s the issue. We should have made it clear that using the browser interface wouldn’t work. So… do this for me:
>
> Update your Agave CLI (cd foundation-cli && git pull) then clients-create -S followed by auth-tokens-create -S . Then, try listing again. I suspect it will work for you then.
>
> Using a non-privledged user, this is what I see after following those steps on a fresh VM
>
> apps-list -P -l 25
>
> SPAdes-hi-mem-3.6.0u1
> geneseqer-large-stampede-5.0.0u2
> geneseqer-medium-stampede-5.0.0u2
> geneseqer-small-stampede-5.0.0u2
> vContact_pcs-0.1.49u4
> vContact-0.1.49u2
> vContact-Gene2Contig-0.1.0u1
> idba_ud_1000gb_24h-1.1.2u1
> idba_ud_32gb_24h-1.1.2u1
> idba_ud_32gb_4h-1.1.2u1
> MetaGeneMark-2.26.0u1
> FragGeneScan-1.20.0u1
> SPAdes-3.6.0u1
> savp-0.3.1u1
> Interproscan-5.16.55u2
> BWA-mem-0.7.12u2
> CloudSTRUCTURE-2.3.4u2
> Platypus-0.7.9.5u1
> Freebayes-0.9.20u1
> GATK_haplotypecaller-3.2.2u1
> GATK_combinegvcfs-3.2.2u1
> GATK_genotypegvcfs-3.2.2u1
> Picard_preprocess-1.98u1
> seqtk_seq-1.0.76u1
> EMS_mutation-1.0.0u1
>
>
>
> > On Feb 17, 2016, at 10:16 AM, Ghiban, Cornel <ghiban at cshl.edu> wrote:
> >
> > Hi all,
> >
> > There seems to be an issue (or more) with Agave API. I'm not seeing any
> > applications available. Could anyone tell us what's going on?
> >
> > Thanks,
> > Cornel
> >
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