[api-dev] submitting jobs with 'archive' => 'false'

Cornel Ghiban ghiban at cshl.edu
Mon May 30 10:13:16 MST 2016


Hi,

I'm submitting jobs with 'archive' set to 'false' but in the job's description 
this flag is set to true.
Also, archivePath is not the one I've set.

Is this a bug or I'm doing something wrong? This used

  {
           'archive' => 'false',
           'jobName' => 'fx16525',
           'min_length' => '20',
           'maxRunTime' => '03:00:00',
           'seq1' => 
'agave://data.iplantcollaborative.org/shared/iplant_DNA_subway/sample_data/fastq/arabidopsis_thaliana/single_end/hy5_rep2.fastq.gz',
           'perform_indexing' => '0',
           'archivePath' => 'ghiban/DNASubway/project-1379/fx16525',
           'appId' => 'dnasubway-fastx-aws-us-west-1-0.0.13.2.0',
           'min_quality' => '20',
           'quality_threshold' => '20',
           'percent_bases' => '50'
         };


https://agave.iplantc.org/jobs/v2
Agave::Client::Transport::_setup_user_agent: Username/token authentication 
selected
::do_post content: 
{"status":"success","message":null,"version":"2.1.8-r135ee68","result":{"id":"5378430521422909926-242ac11b-0001-007","name":"fx16525","owner":"ghiban","appId":"dnasubway-fastx-aws-us-west-1-0.0.13.2.0","executionSystem":"dnasubway-cfncluster.us-west-1.compute.amazonaws.com","batchQueue":"all.q","nodeCount":1,"processorsPerNode":2,"memoryPerNode":4.0,"maxRunTime":"03:00:00","archive":true,"retries":0,"localId":null,"created":"2016-05-30T12:02:29.105-05:00","archivePath":"ghiban/archive/jobs/job-5378430521422909926-242ac11b-0001-007","archiveSystem":"data.iplantcollaborative.org","outputPath":null,"status":"PENDING","submitTime":"2016-05-30T12:02:31.001-05:00","startTime":null,"endTime":null,"inputs":{"seq1":["agave://data.iplantcollaborative.org/shared/iplant_DNA_subway/sample_data/fastq/arabidopsis_thaliana/single_end/hy5_rep2.fastq.gz"]},"parameters":{"perform_indexing":0,"quality_threshold":20,"min_length":20,"jobName":"fx16525","percent_bases":50,"min_quality":20},"_links":{"self":
{"href":"https://agave.iplantc.org/jobs/v2/5378430521422909926-242ac11b-0001-007"},"app":{"href":"https://agave.iplantc.org/apps/v2/dnasubway-fastx-aws-us-west-1-0.0.13.2.0"},"executionSystem":{"href":"https://agave.iplantc.org/systems/v2/dnasubway-cfncluster.us-west-1.compute.amazonaws.com"},"archiveSystem":{"href":"https://agave.iplantc.org/systems/v2/data.iplantcollaborative.org"},"archiveData":{"href":"https://agave.iplantc.org/jobs/v2/5378430521422909926-242ac11b-0001-007/outputs/listings"},"owner":{"href":"https://agave.iplantc.org/profiles/v2/ghiban"},"permissions":{"href":"https://agave.iplantc.org/jobs/v2/5378430521422909926-242ac11b-0001-007/pems"},"history":{"href":"https://agave.iplantc.org/jobs/v2/5378430521422909926-242ac11b-0001-007/history"},"metadata":{"href":"https://agave.iplantc.org/meta/v2/data/?q=%7B%22associationIds%22%3A%225378430521422909926-242ac11b-0001-007%22%7D"},"notifications":{"href":"https://agave.iplantc.org/notifications/v2/?associatedUuid=5378430521
422909926-242ac11b-0001-007"},"notification":[]}}}


Thanks,
Cornel



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