[api-dev] Agave status

[Matthew Vaughn]

Have you regenerated a new client and token set? And if you did, did you use the browser interface or did you use the Agave CLI? If the former, that’s the issue. We should have made it clear that using the browser interface wouldn’t work. So… do this for me:

Update your Agave CLI (cd foundation-cli && git pull) then clients-create -S followed by auth-tokens-create -S . Then, try listing again. I suspect it will work for you then. 

Using a non-privledged user, this is what I see after following those steps on a fresh VM

apps-list -P -l 25

SPAdes-hi-mem-3.6.0u1
geneseqer-large-stampede-5.0.0u2
geneseqer-medium-stampede-5.0.0u2
geneseqer-small-stampede-5.0.0u2
vContact_pcs-0.1.49u4
vContact-0.1.49u2
vContact-Gene2Contig-0.1.0u1
idba_ud_1000gb_24h-1.1.2u1
idba_ud_32gb_24h-1.1.2u1
idba_ud_32gb_4h-1.1.2u1
MetaGeneMark-2.26.0u1
FragGeneScan-1.20.0u1
SPAdes-3.6.0u1
savp-0.3.1u1
Interproscan-5.16.55u2
BWA-mem-0.7.12u2
CloudSTRUCTURE-2.3.4u2
Platypus-0.7.9.5u1
Freebayes-0.9.20u1
GATK_haplotypecaller-3.2.2u1
GATK_combinegvcfs-3.2.2u1
GATK_genotypegvcfs-3.2.2u1
Picard_preprocess-1.98u1
seqtk_seq-1.0.76u1
EMS_mutation-1.0.0u1



> On Feb 17, 2016, at 10:16 AM, Ghiban, Cornel <ghiban at cshl.edu> wrote:
> 
> Hi all,
> 
> There seems to be an issue (or more) with Agave API. I'm not seeing any
> applications available. Could anyone tell us what's going on?
> 
> Thanks,
> Cornel
> 
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