[Iplant-api-dev] Unable to stage inputs for job after 3 attempts. Job cancelled

[Ghiban, Cornel]

Hi Matt,

One of the differences from the other apps we have in Agave is that
cuffdiff may take many input files (some quite large) and I think this
could be the main reason these jobs fail.

Cornel

On Wed, 2015-11-11 at 14:57 +0000, Matthew Vaughn wrote:
> Thanks for the job IDs. We’re looking into it. Very curious that it’s just Richard’s jobs. Permissions look OK, and there’s no obvious log info. Let me see if I can replicate it by running a job of his myself.
> 
> Matt
> 
> > On Nov 11, 2015, at 8:34 AM, Ghiban, Cornel <ghiban at cshl.edu> wrote:
> > 
> > Hi,
> > 
> > I have a user has keeps getting errors on his final step of his
> > analysis. Just to give you an idea, he started his project at the end of
> > July and he's trying to compare the spaceflight transcriptome of four
> > commonly used Arabidopsis thaliana ecotypes.
> > 
> > Here are the last 5 CUFFDIFF jobs that failed with the error "Unable to
> > stage inputs for job after 3 attempts. Job cancelled.":
> > 
> > 5502699045213966821-e0bd34dffff8de6-0001-007
> > 5742354097154626021-e0bd34dffff8de6-0001-007
> > 7819059084788428315-e0bd34dffff8de6-0001-007
> > 6417341257285037595-e0bd34dffff8de6-0001-007
> > 6944550352745599461-e0bd34dffff8de6-0001-007
> > 
> > There's been other users that successfully finished their CUFFDIFF jobs,
> > so it's not an app issue.
> > 
> > Thank you,
> > Cornel
> > 
> > -------- Forwarded Message --------
> > From: Richard Barker <dr.richard.barker at gmail.com>
> > To: "Ghiban, Cornel" <ghiban at cshl.edu>
> > Subject: Re: DNASUBWAY is back online
> > Date: Wed, 11 Nov 2015 09:20:28 -0500
> > 
> > Hi Cornel
> > 
> > 
> > My final run keeps failing, it says in the message section of the
> > failure report that "Unable to stage inputs for job after 3 attempts.
> > Job cancelled."
> > 
> > I'm not sure what else to try?
> > 
> > 
> > Best wishes, Richard
> > 
> > 
> > On 10 November 2015 at 14:03, Richard Barker
> > <dr.richard.barker at gmail.com> wrote:
> >        That's great, i just up loaded the final cuffdiff analysis, and
> >        will be showing it to the NASA team in a couple of hours... :)
> > 
> > 
> >        On 10 November 2015 at 12:21, Ghiban, Cornel <ghiban at cshl.edu>
> >        wrote:
> >                Hi Richard,
> > 
> >                The greenline is up and running. Let us know if you
> >                encounter any
> >                issues.
> > 
> >                Cornel
> > 
> > 
> > 
> > 
> >        -- 
> >        Richard Barker, PhD
> >        Post doctoral research associate
> >        Gilroy Lab - B121 Birge Hall
> >        430 Lincoln Drive
> >        Madison,
> >        WI, 53706, USA
> > 
> >        Mobile: (608) 515 0516
> >        Personal website: https://drrichardbarker.wordpress.com/
> >        Gilroy Lab: http://www.botany.wisc.edu/gilroy/
> >        GeneLab: http://genelab.nasa.gov/
> > 
> > 
> > 
> > 
> > 
> > 
> > -- 
> > Richard Barker, PhD
> > Post doctoral research associate
> > Gilroy Lab - B121 Birge Hall
> > 430 Lincoln Drive
> > Madison,
> > WI, 53706, USA
> > 
> > Mobile: (608) 515 0516
> > Personal website: https://drrichardbarker.wordpress.com/
> > Gilroy Lab: http://www.botany.wisc.edu/gilroy/
> > GeneLab: http://genelab.nasa.gov/
> > 
> > 
> > 
> > 
> > 
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