[Iplant-api-dev] Interproscan
Barthelson, Roger A - (rogerab)
rogerab at email.arizona.edu
Thu May 28 14:14:21 MST 2015
Thanks, Matt. This failure was yesterday at about 2 PM MST, so has the LMOD problem been fixed since then?
Roger
--
Roger Barthelson Ph.D.
Scientific Analyst
iPlant Collaborative
BIO5 Institute, University of Arizona
Phone: 520-977-5249
Email: rogerab at email.arizona.edu<mailto:rogerab at email.arizona.edu>
Web: www.iplantcollaborative.org/<http://www.iplantcollaborative.org/>
On May 28, 2015 at 2:10:41 PM, Matthew Vaughn (vaughn at tacc.utexas.edu<mailto:vaughn at tacc.utexas.edu>) wrote:
Can you send me that job ID off list so I can look into it behind the scenes?
On May 28, 2015, at 3:50 PM, Barthelson, Roger A - (rogerab) <rogerab at email.arizona.edu<mailto:rogerab at email.arizona.edu>> wrote:
Does anyone know if Interproscan is supposed to be working? I have tested it twice and got an error both times. e.g.:
{
"status" : "success",
"message" : null,
"version" : "2.1.0-r6d11c",
"result" : { }
}splitfasta.pl -f blattrinity_pep.fa -o split_fasta -n 1000
splitfasta DONE
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
/opt/apps/launcher/launcher-2.0/paramrun: line 136: [: -ne: unary operator expected
Warning: Permanently added 'c429-702,129.114.70.134' (RSA) to the list of known hosts.
Warning: Permanently added 'c435-202,129.114.71.100' (RSA) to the list of known hosts.
Warning: Permanently added 'c432-904,129.114.71.10' (RSA) to the list of known hosts.
Warning: Permanently added 'c429-302,129.114.70.118' (RSA) to the list of known hosts.
Warning: Permanently added 'c429-303,129.114.70.119' (RSA) to the list of known hosts.
Warning: Permanently added 'c434-902,129.114.71.88' (RSA) to the list of known hosts.
Warning: Permanently added 'c433-104,129.114.71.18' (RSA) to the list of known hosts.
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
/opt/apps/launcher/launcher-2.0/init_launcher: line 23: [: : integer expression expected
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m24.813s
user0m37.986s
sys0m1.183s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m27.281s
user0m45.708s
sys0m1.092s
real0m28.019s
user0m45.755s
sys0m1.106s
real0m27.228s
user0m45.858s
sys0m1.127s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m27.372s
user0m46.114s
sys0m1.078s
real0m27.399s
user0m45.975s
sys0m1.107s
real0m27.420s
user0m46.055s
sys0m1.144s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m27.501s
user0m46.408s
sys0m1.074s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m27.634s
user0m46.559s
sys0m1.153s
real0m27.464s
user0m46.838s
sys0m1.072s
real0m27.491s
user0m46.785s
sys0m1.178s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m27.754s
user0m47.394s
sys0m1.125s
real0m27.866s
user0m47.569s
sys0m1.180s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m28.164s
user0m47.645s
sys0m1.141s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m28.981s
user0m48.554s
sys0m1.105s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m28.271s
user0m48.739s
sys0m1.182s
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
real0m19.866s
user0m45.780s
sys0m0.996s
real0m51.123s
user0m0.450s
sys0m0.139s
egrep: output/seqfile.8.xml: No such file or directory
cat: output/seqfile.8.tsv: No such file or directory
cat: output/seqfile.8.gff3: No such file or directory
egrep: output/seqfile.6.xml: No such file or directory
cat: output/seqfile.6.tsv: No such file or directory
cat: output/seqfile.6.gff3: No such file or directory
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cat: output/seqfile.7.tsv: No such file or directory
cat: output/seqfile.7.gff3: No such file or directory
egrep: output/seqfile.10.xml: No such file or directory
cat: output/seqfile.10.tsv: No such file or directory
cat: output/seqfile.10.gff3: No such file or directory
egrep: output/seqfile.4.xml: No such file or directory
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egrep: output/seqfile.11.xml: No such file or directory
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egrep: output/seqfile.5.xml: No such file or directory
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egrep: output/seqfile.3.xml: No such file or directory
cat: output/seqfile.3.tsv: No such file or directory
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egrep: output/seqfile.12.xml: No such file or directory
cat: output/seqfile.12.tsv: No such file or directory
cat: output/seqfile.12.gff3: No such file or directory
egrep: output/seqfile.0.xml: No such file or directory
cat: output/seqfile.0.tsv: No such file or directory
cat: output/seqfile.0.gff3: No such file or directory
{
"status" : "success",
"message" : null,
"version" : "2.1.0-r6d11c",
"result" : { }
}
Roger
--
Roger Barthelson Ph.D.
Scientific Analyst
iPlant Collaborative
BIO5 Institute, University of Arizona
Phone: 520-977-5249
Email: rogerab at email.arizona.edu<mailto:rogerab at email.arizona.edu>
Web: www.iplantcollaborative.org/<http://www.iplantcollaborative.org/>
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