[Iplant-api-dev] Error building SPA on stampede

[Rion Dooley]

He doesn’t have the gcc 4.7 compiler loaded. I’m building it now. I’ll send instructions when It completes. 

—
Rion 

> On Feb 27, 2015, at 3:50 PM, Matthew Vaughn <vaughn at tacc.utexas.edu> wrote:
> 
> I’d guess that flag is not supported under the default system GCC which is 
> 
> gcc -v
> Using built-in specs.
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) 
> 
> You have the option to swap to more recent releases of that compiler via the modules system: gcc/4.4.6, gcc/4.6.3, gcc/4.7.1, and you would do so via a command like module load "module load gcc/4.7.1"
> 
> I assume you are building an Agave app. This will mean that you will need at least
> 
> purge
> load TACC
> module load gcc/4.7.1
> 
> in your list of custom modules in the app description.
> 
> Cheers,
> 
> Matt
> 
>> On Feb 27, 2015, at 2:43 PM, Youens-Clark, Charles Kenneth - (kyclark) <kyclark at email.arizona.edu> wrote:
>> 
>> I loaded no modules.  In my $WORK/src/sfaspa-0.2.0, I ran the “install.sh” script and got this.
>> 
>> Ken
>> 
>>> On Feb 27, 2015, at 1:34 PM, Rion Dooley <dooley at tacc.utexas.edu> wrote:
>>> 
>>> What compiler are you using? Did you module load?
>>> 
>>> --
>>> Rion
>>> 
>>> ----- Reply message -----
>>> From: "Youens-Clark, Charles Kenneth - (kyclark)" <kyclark at email.arizona.edu>
>>> To: "Rion Dooley" <dooley at tacc.utexas.edu>
>>> Cc: "Discussion of iPlant API development" <iplant-api-dev at iplantcollaborative.org>
>>> Subject: [Iplant-api-dev] Error building SPA on stampede
>>> Date: Fri, Feb 27, 2015 2:59 PM
>>> 
>>> While trying to compile SFA-SPA (http://sourceforge.net/projects/spa-assembler/) on stampede (trying to make an app for this), I get the following error:
>>> 
>>> Installing SPA ...
>>> rm -f /home1/03137/kyclark/src/sfaspa-0.2.0/bin/* *.o *core
>>> g++ -std=c++11 -Wall -Wno-deprecated -fopenmp -I/home1/03137/kyclark/src/sfaspa-0.2.0/3rd/seqan -I/home1/03137/kyclark/src/sfaspa-0.2.0/3rd/libdivsufsort-2.0.1/build/include -I/include -c param.cpp
>>> cc1plus: error: unrecognized command line option "-std=c++11"
>>> make: *** [param.o] Error 1
>>> 
>>> I’m stumped.
>>> 
>>> Ken
>>> 
>>> _______________________________________________
>>> Iplant-api-dev Mailing List: Iplant-api-dev at iplantcollaborative.org
>>> List Info and Archives: http://mail.iplantcollaborative.org/mailman/listinfo/iplant-api-dev  
>>> One-click Unsubscribe: http://mail.iplantcollaborative.org/mailman/options/iplant-api-dev/dooley%40tacc.utexas.edu?unsub=1&unsubconfirm=1
>> 
>> 
>> _______________________________________________
>> Iplant-api-dev Mailing List: Iplant-api-dev at iplantcollaborative.org
>> List Info and Archives: http://mail.iplantcollaborative.org/mailman/listinfo/iplant-api-dev  
>> One-click Unsubscribe: http://mail.iplantcollaborative.org/mailman/options/iplant-api-dev/vaughn%40tacc.utexas.edu?unsub=1&unsubconfirm=1 
> 
> 
> _______________________________________________
> Iplant-api-dev Mailing List: Iplant-api-dev at iplantcollaborative.org
> List Info and Archives: http://mail.iplantcollaborative.org/mailman/listinfo/iplant-api-dev  
> One-click Unsubscribe: http://mail.iplantcollaborative.org/mailman/options/iplant-api-dev/dooley%40tacc.utexas.edu?unsub=1&unsubconfirm=1