[Iplant-api-dev] Error with InterProScan via DE

[Nicole Hopkins]

Up until a few weeks ago, the InterProScan5-44.0 tool in the DE was working
quite well. Fiona and Cathy have been using it, and have recently had jobs
complete, but with empty datasets returned.
A look at the .out log from the tool gives this error message:

TACC Launcher -> Iniating task 1 on c339-104.ls4.tacc.utexas.edu (time
/scratch/projects/tacc/iplant/interproscan/5/interproscan-5-44.0/interproscan.sh
--formats tsv,gff3,xml --iprlookup --goterms --pathways --tempdir /tmp
--output-dir output --input split_fasta/seqfile.0 )
Java not found. Please install java
and place it on your path,
or edit the interproscan.sh script to refer to your java installation.
.TACC: Shutting down parallel environment.
TACC: Shutdown complete. Exiting.
{"status":"success","message":"","result":{"id":54209,"name":"InterproScan5-44.0_example_test2-2014-06-26-16-50-

This is running via on v1 of the API. I am assuming it will be running via
Agave as well, but is there a fix that can be put in place near term?


-- 
Nicole Hopkins
Scientific Initiatives Coordinator
iPlant Collaborative- University of Arizona
(520) 626-7390
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