[Iplant-api-dev] Job Arrays via Agave or fAPI?

[Matthew Vaughn]

TACC doesn’t allow job arrays for performance reasons. However, take a peek at this repo:

https://github.com/mwvaughn/blast-2.2.26/tree/master/stampede

for how to use our Parametric Launcher. Also, ping Nirav as he’s working through the same problem right now.

Matt

On Feb 27, 2014, at 3:41 PM, Jennewein, Douglas M <Doug.Jennewein at usd.edu<mailto:Doug.Jennewein at usd.edu>> wrote:

I am attempting to create some embarrassingly parallel blast jobs.  One approach is to split the input file into several fasta files and run each in its own blast job task by creating a Job Array<http://slurm.schedmd.com/job_array.html>.

Is there a way to specify a Job Array through fAPI or Agave?

On a related note, is it possible to specify job dependencies?

Doug Jennewein
Research Computing Manager
Information Technology Services
The University of South Dakota

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Matthew W. Vaughn, Ph.D.

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Texas Advanced Computing Center
The University of Texas at Austin

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