[Iplant-api-dev] newbler failure

[Barthelson, Roger A - (rogerab)]

I was able to submit a job, have it run and then archive the results successfully now. I used Newbler as my app. The only problem is that the actual job failed. In the .err file there was this:
ERROR: resolveRodsTarget: srcPath /iplant/home/rogerab/FFGLB5S04.sff does not exist
ERROR: getUtil: resolveRodsTarget status = -317000 USER_INPUT_PATH_ERR
terminate called after throwing an instance of 'std::out_of_range’

For some reason, it was looking at the wrong path for the input file. The file path was entered as this in the json file for the job: /rogerab/data/sequencing1/FFGLB5S04.sff.

Roger

--
Roger Barthelson Ph.D.
Scientific Analyst
iPlant Collaborative
BIO5 Institute, University of Arizona
Phone: 520-977-5249
Email: rogerab at email.arizona.edu<mailto:rogerab at email.arizona.edu>
Web: www.iplantcollaborative.org/<http://www.iplantcollaborative.org/>
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