[Iplant-api-dev] Job status ARCHIVING_FINISHED but can't find output

[Rion Dooley]

Interesting issue. The iPlant Data Store isn't configured to allow users to recursively own the contents of their collection tree, so behavior like this, which is uncommon in a unix environment, is something we need to watch out for in the Data Store. Thanks for the update. Glad to hear you found a working solution.

Rion

________________________________________
From: iplant-api-dev-bounces at iplantcollaborative.org [iplant-api-dev-bounces at iplantcollaborative.org] on behalf of Darren Boss [dboss at email.arizona.edu]
Sent: Wednesday, October 23, 2013 2:48 PM
To: Rion Dooley
Cc: Discussion of iPlant API development
Subject: Re: [Iplant-api-dev] Job status ARCHIVING_FINISHED but can't find      output

Turns out the collections were all there but the acl was not set
correctly so I couldn't see them. If I explicitly set the archivePath
the job is rejected until I set all the intermediate
folders/collections but then I know the acls are good. The collections
under archive/jobs all had the correct acls.

On Wed, Oct 23, 2013 at 9:50 AM, Darren Boss <dboss at email.arizona.edu> wrote:
> The id of the jobs are 30925-30934 and the outputurl for the job with
> 30930 is https://foundation.iplantcollaborative.org/io-v1/io/list/imicrobe/archive/jobs/job-30930-imicrobe-blast-2225-simap
> but I can't find any job output in irods. There were about 10 jobs,
> all very similar. I have successfully run this foundation app using
> the account that created the app. I granted permission for the
> imicrobe user to run this app as well. I could see them running under
> the iplant user on lonestar.
>
> This is not running from the DE using the fAPI adaptor, the jobs are
> being launched via Python script which I've written. The archive/jobs
> folders don't exist on the imicrobe account either. Should I create
> the archive/jobs folders and try again? Shouldn't the job status be
> ARCHIVING_FAILED in this case?
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