[Iplant-api-dev] job failures Lonestar

[Sheldon McKay]

We are also experiencing this since 7/23.


On Fri, Jul 26, 2013 at 3:27 PM, Jennewein, Douglas M <
Doug.Jennewein at usd.edu> wrote:

> Not sure if this is related or not, but we’re experiencing API jobs on
> lonestar stuck in the Pending state.****
>
> ** **
>
> Launching jobs via the Test Application as both djennewe and bioextract
> results in the jobs hanging in the Pending state.  This seems to happen for
> tools those accounts have deployed as well as for shared tools like
> clustalw2-lonestar-2.1.****
>
> ** **
>
> We first noticed this on 7-24.****
>
> ** **
>
> Doug Jennewein****
>
> ** **
>
> *From:* iplant-api-dev-bounces at iplantcollaborative.org [mailto:
> iplant-api-dev-bounces at iplantcollaborative.org] *On Behalf Of *Rion Dooley
> *Sent:* Tuesday, July 23, 2013 7:42 PM
> *To:* Jennewein, Douglas M
> *Cc:* iPlant API Developers Mailing List
> *Subject:* Re: [Iplant-api-dev] job failures Lonestar****
>
> ** **
>
> Something changed on lonestar. I wad getting tons of errors trying to
> source module load  irods. When I spidered, the module showed up as
> iRODS/3.1. I updated to that and the exceptions went away. I can update the
> db if need be as well.****
>
> ** **
>
> -****
>
> Rion****
>
> ** **
>
> ----- Reply message -----
> From: "Matthew Vaughn" <vaughn at tacc.utexas.edu>
> To: "Rion Dooley" <dooley at tacc.utexas.edu>
> Cc: "Discussion of iPlant API development" <
> iplant-api-dev at iplantcollaborative.org>
> Subject: [Iplant-api-dev] job failures Lonestar
> Date: Tue, Jul 23, 2013 5:22 PM****
>
> ** **
>
> Not intentional. I suspect Chris Jordan didn't realize people were relying
> on irods lower case.  ****
>
> ** **
>
> However, module load failures should not stop jobs from running. The
> iplant community account has the icommands in its default path. Please
> share the error messages from the failed jobs, especially the ones in the
> condor log as those contain info from the API service ****
>
> ** **
>
> On Jul 23, 2013, at 5:08 PM, "Barthelson, Roger A - (rogerab)" <
> rogerab at email.arizona.edu>****
>
>  wrote:****
>
>
>
> ****
>
> I'm getting job failures for API jobs on Lonestar. It looks like the
> module for iRods is now iRODS instead of irods, which causes many of my
> Lonestar apps to fail. I suspect TACC module updates being the cause. I
> don't know if this was an intentional change or not.****
>
> ** **
>
> Roger****
>
> ** **
>
> Roger Barthelson Ph.D.****
>
> Scientific Analyst****
>
> iPlant Collaborative****
>
> BIO5 Institute, University of Arizona****
>
> Phone: 520-977-5249****
>
> Email: rogerab at email.arizona.edu****
>
> Web: www.iplantcollaborative.org/****
>
>            bio-it.arizona.edu/Roger_Barthelson_Home.html****
>
> ** **
>
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