[Iplant-api-dev] accessing code in iPlant

[Bonnie Hurwitz]

Thank you!  Bonnie


On Jul 16, 2013, at 9:11 AM, Matthew Vaughn <vaughn at tacc.utexas.edu> wrote:

> For any public application, say "blastx-stampede-ncbi-db-2.2.26u1" grab the JSON, extract deploymentPath (/ipcservices/applications/blastx-stampede-ncbi-db-2.2.26u1.zip in this case) and then use icommands to fetch like so
> 
> iget -frPVT /iplant/home/ipcservices/applications/blastx-stampede-ncbi-db-2.2.26u1.zip . 
> 
> Notice the leading /iplant/home
> 
> For a private application, deploymentPath will be a directory rather than a zip file but will otherwise work the same. In both cases, the 'templatePath' will point to the file that is used for creating the submit script that is submitted to the executionHost. In the case of the blasts-stampede app it is 'blastx.sge'
> 
> 
> 
> On Jul 16, 2013, at 10:58 AM, Bonnie Hurwitz <bhurwitz at email.arizona.edu>
> wrote:
> 
>> Hi Matt,
>> 
>> Based on the instructions you gave us for fetching code, we can only access the json file.  Is there a way to also access the shell script and/or zip package?
>> 
>> Thanks,
>> Bonnie
>> 
>