[Iplant-api-dev] failed job

[Rion Dooley]

You want the file, not the listing.

https://foundation.iplantcollaborative.org/apps-v1/job/36324/output/mkhalfan-36324-1386875398000/fx863-36324.err<https://foundation.iplantcollaborative.org/apps-v1/job/36324/output/list/mkhalfan-36324-1386875398000/fx863-36324.err>

Rion

________________________________
From: Khalfan, Mohammed [mkhalfan at cshl.edu]
Sent: Thursday, December 12, 2013 3:30 PM
To: Rion Dooley
Cc: Discussion of iPlant API development
Subject: RE: failed job

Is this the correct path for the error report?
https://foundation.iplantcollaborative.org/apps-v1/job/36324/output/list/mkhalfan-36324-1386875398000/fx863-36324.err

This gives me this message:
{"status":"success","message":"","result":[{"name":"/iplant/home/mkhalfan/DNASubway/cuffdiff_test/fx863/fastx_out","path":"/mkhalfan/DNASubway/cuffdiff_test/fx863","owner":"ipcservices","length":0,"lastModified":1386883603000,"type":"dir","mimeType":"application/binary","format":"folder","permission":"READ","parent":"/mkhalfan-36324-1386875398000/fx863-36324.err","url":"https://foundation.iplantcollaborative.org/io-v1/io/mkhalfan/DNASubway/cuffdiff_test/fx863//iplant/home/mkhalfan/DNASubway/cuffdiff_test/fx863/fastx_out"},{"name":"fx863-36324.err","path":"/mkhalfan/DNASubway/cuffdiff_test/fx863","owner":"ipcservices","length":2818,"lastModified":1386883606000,"type":"file","mimeType":"application/binary","format":"unknown","permission":"READ","parent":"/mkhalfan-36324-1386875398000/fx863-36324.err","url":"https://foundation.iplantcollaborative.org/io-v1/io/mkhalfan/DNASubway/cuffdiff_test/fx863/fx863-36324.err"},{"name":"fx863-36324.out","path":"/mkhalfan/DNASubway/cuffdiff_test/fx863","owner":"ipcservices","length":1188,"lastModified":1386883605000,"type":"file","mimeType":"application/binary","format":"unknown","permission":"READ","parent":"/mkhalfan-36324-1386875398000/fx863-36324.err","url":"https://foundation.iplantcollaborative.org/io-v1/io/mkhalfan/DNASubway/cuffdiff_test/fx863/fx863-36324.out"}]}


Which I can’t make out a clear error from. I submitted a bunch of these FastX jobs on Monday and they all completed, I’m submitting again using the same data and I’m getting the failure, which is why I’m puzzled. Please advise.

Thank you.

From: Rion Dooley [mailto:dooley at tacc.utexas.edu]
Sent: Thursday, December 12, 2013 4:22 PM
To: Khalfan, Mohammed
Cc: Discussion of iPlant API development
Subject: RE: failed job

Have you looked at your error logs?

________________________________
From: iplant-api-dev-bounces at iplantcollaborative.org<mailto:iplant-api-dev-bounces at iplantcollaborative.org> [iplant-api-dev-bounces at iplantcollaborative.org] on behalf of Khalfan, Mohammed [mkhalfan at cshl.edu]
Sent: Thursday, December 12, 2013 3:09 PM
To: Rion Dooley
Cc: Discussion of iPlant API development
Subject: [Iplant-api-dev] failed job
Hi Rion,

I submitted a few FastX jobs a couple hours ago, three are in the queue currently (which is fine), but one failed (36324)…. Why is this happening?

Thank you,
Mohammed

Mohammed Khalfan
Bioinformatics Developer
DNA Learning Center
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor NY 11724
(516)367-5162
www.dnalc.org<http://www.dnalc.org/>

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